Translational recoding: canonical translation mechanisms reinterpreted.

During canonical translation, the ribosome moves along an mRNA from the start to the stop codon in exact steps of one codon at a time. The collinearity of the mRNA and the protein sequence is essential for the quality of the cellular proteome. Spontaneous errors in decoding or translocation are rare and result in a deficient protein. However, dedicated recoding signals in the mRNA can reprogram the ribosome to read the message in alternative ways. This review summarizes the recent advances in understanding the mechanisms of three types of recoding events: stop-codon readthrough, -1 ribosome frameshifting and translational bypassing. Recoding events provide insights into alternative modes of ribosome dynamics that are potentially applicable to other non-canonical modes of prokaryotic and eukaryotic translation.

Dynamics of ribosomes and release factors during translation termination in E. coli.

Release factors RF1 and RF2 promote hydrolysis of peptidyl-tRNA during translation termination. The GTPase RF3 promotes recycling of RF1 and RF2. Using single molecule FRET and biochemical assays, we show that ribosome termination complexes that carry two factors, RF1-RF3 or RF2-RF3, are dynamic and fluctuate between non-rotated and rotated states, whereas each factor alone has its distinct signature on ribosome dynamics and conformation. Dissociation of RF1 depends on peptide release and the presence of RF3, whereas RF2 can dissociate spontaneously. RF3 binds in the GTP-bound state and can rapidly dissociate without GTP hydrolysis from termination complex carrying RF1. In the absence of RF1, RF3 is stalled on ribosomes if GTP hydrolysis is blocked. Our data suggest how the assembly of the ribosome-RF1-RF3-GTP complex, peptide release, and ribosome fluctuations promote termination of protein synthesis and recycling of the release factors.

Kinetics of Spontaneous and EF-G-Accelerated Rotation of Ribosomal Subunits.

Ribosome dynamics play an important role in translation. The rotation of the ribosomal subunits relative to one another is essential for tRNA-mRNA translocation. An important unresolved question is whether subunit rotation limits the rate of translocation. Here, we monitor subunit rotation relative to peptide bond formation and translocation using ensemble kinetics and single-molecule FRET. We observe that spontaneous forward subunit rotation occurs at a rate of 40 s(-1), independent of the rate of preceding peptide bond formation. Elongation factor G (EF-G) accelerates forward subunit rotation to 200 s(-1). tRNA-mRNA movement is much slower (10-40 s(-1)), suggesting that forward subunit rotation does not limit the rate of translocation. The transition back to the non-rotated state of the ribosome kinetically coincides with tRNA-mRNA movement. Thus, large-scale movements of the ribosome are intrinsically rapid and gated by its ligands such as EF-G and tRNA.

Two-State Intramolecular Charge Transfer (ICT) with 3,5-Dimethyl-4-(dimethylamino)benzonitrile (MMD) and Its Meta-Isomer mMMD. Ground State Amino Twist Not Essential for ICT.

From X-ray structure analysis, amino twist angles of 90.0° for 2,4-dimethyl-3-(dimethylamino)benzonitrile (mMMD), 82.7° for 4-(di-tert-butylamino)benzonitrile (DTABN), and 88.7° for 6-cyanobenzoquinuclidine (CBQ) are determined, all considerably larger than the 57.4° of 3,5-dimethyl-4-(dimethylamino)benzonitrile (MMD). This large twist leads to lengthening of the amino-phenyl bond, 143.5 pm (mMMD), 144.1 pm (DTABN), 144.6 pm (CBQ), and 141.4 pm (MMD), as compared with 136.5 pm for the planar 4-(dimethylamino)benzonitrile (DMABN). As a consequence, the electronic coupling between the amino and phenyl subgroups in mMMD, DTABN, CBQ, and MMD is much weaker than in DMABN, as seen from the strongly reduced molar absorption coefficients. The fluorescence spectrum of MMD in n-hexane at 25 °C consists of two emissions, from a locally excited (LE) and an intramolecular charge transfer (ICT) state, with a fluorescence quantum yield ratio Φ'(ICT)/Φ(LE) of 12.8. In MeCN, a single ICT emission is found. With mMMD in n-hexane, in contrast, only LE fluorescence is observed, whereas the spectrum in MeCN originates from the ICT state. These differences are also seen from the half-widths of the overall fluorescence bands, which in n-hexane are larger for MMD than for mMMD, decreasing with solvent polarity for MMD and increasing for mMMD, reflecting the disappearance of LE and the onset of ICT in the overall spectra, respectively. From solvatochromic measurements the dipole moments µe(ICT) of MMD (16 D) and mMMD (15 D) are obtained. Femtosecond excited state absorption (ESA) spectra at 22 °C, together with the dual (LE + ICT) fluorescence, reveal that MMD in n-hexane undergoes a reversible LE ⇄ ICT reaction, with LE as the precursor, with a forward rate constant ka = 5.6 × 10(12) s(-1) and a back-reaction kd ∼ 0.05 × 10(12) s(-1). With MMD in the strongly polar solvent MeCN, ICT is faster: ka = 10 × 10(12) s(-1). In the case of mMMD in n-hexane, the ESA spectra show that ICT does not take place, contrary to MeCN, in which ka = 2.5 × 10(12) s(-1). The ICT reactions with MMD and mMMD are much faster than that of the parent compound DMABN in MeCN, with ka = 0.24 × 10(12) s(-1). Because of the very short ICT reaction times of 180 fs (MMD, n-hexane), 100 fs (MMD, MeCN), and 400 fs (mMMD, MeCN), it is clear that the picosecond fluorescence decays of these systems appear to be single exponential, due to the insufficient time resolution of 3 ps. It is concluded that the faster LE → ICT reaction of MMD as compared with DMABN (ka = 0.24 × 10(12) s(-1) in MeCN) is caused by a smaller energy gap ΔE(S1,S2) between the lowest singlet excited states and not by the large amino twist angle. Similarly, the larger ΔE(S1,S2) of mMMD as compared with MMD is held responsible for its smaller ICT efficiency (no reaction in n-hexane).

Fluctuations between multiple EF-G-induced chimeric tRNA states during translocation on the ribosome.

The coupled translocation of transfer RNA and messenger RNA through the ribosome entails large-scale structural rearrangements, including step-wise movements of the tRNAs. Recent structural work has visualized intermediates of translocation induced by elongation factor G (EF-G) with tRNAs trapped in chimeric states with respect to 30S and 50S ribosomal subunits. The functional role of the chimeric states is not known. Here we follow the formation of translocation intermediates by single-molecule fluorescence resonance energy transfer. Using EF-G mutants, a non-hydrolysable GTP analogue, and fusidic acid, we interfere with either translocation or EF-G release from the ribosome and identify several rapidly interconverting chimeric tRNA states on the reaction pathway. EF-G engagement prevents backward transitions early in translocation and increases the fraction of ribosomes that rapidly fluctuate between hybrid, chimeric and posttranslocation states. Thus, the engagement of EF-G alters the energetics of translocation towards a flat energy landscape, thereby promoting forward tRNA movement.

Dynamic switch of the signal recognition particle from scanning to targeting.

Ribosomes synthesizing inner membrane proteins in Escherichia coli are targeted to the membrane by the signal recognition particle (SRP) pathway. By rapid kinetic analysis we show that after initial binding to the ribosome, SRP undergoes dynamic fluctuations in search of additional interactions. Non-translating ribosomes, or ribosomes synthesizing non-membrane proteins, do not provide these contacts, allowing SRPs to dissociate rapidly. A nascent peptide in the exit tunnel stabilizes SRPs in a standby state. Binding to the emerging signal-anchor sequence (SAS) of a nascent membrane protein halts the fluctuations of SRP, resulting in complex stabilization and recruitment of the SRP receptor. We propose a kinetic model where SRP rapidly scans all ribosomes until it encounters a ribosome exposing an SAS. Binding to the SAS switches SRP into the targeting mode, in which dissociation is slow and docking of the SRP receptor is accelerated.

Presence and absence of excited state intramolecular charge transfer with the six isomers of dicyano-N,N-dimethylaniline and dicyano-(N-methyl-N-isopropyl)aniline.

The excited state behavior of the six m,n-dicyano-N,N-dimethylanilines (mnDCDMA) and m,n-dicyano-(N-methyl-N-isopropyl)anilines (mnDCMIA) is discussed as a function of solvent polarity and temperature. The dicyano moiety in these electron donor (D)/acceptor (A) molecules has a considerably larger electron affinity than the benzonitrile subgroup in 4-(dimethylamino)benzonitrile (DMABN). Nevertheless, the fluorescence spectra of the mnDCDMAs and mnDCMIAs in n-hexane all consist of a single emission originating from the locally excited (LE) state, indicating that a reaction from LE to an intramolecular charge transfer (ICT) state does not take place. The calculated energies E(ICT), obtained by employing the reduction potential of the dicyanobenzene subgroups and the oxidation potential of the amino substituents trimethylamine (N(Me)(3)) and isopropyldimethylamine (iPrNMe(2)), are lower than E(LE). The absence of an LE → ICT reaction therefore makes clear that the D and A units in the dicyanoanilines are not electronically decoupled. In the polar solvent acetonitrile (MeCN), dual (LE + ICT) fluorescence is found with 24DCDMA and 34DCDMA, as well as with 24DCMIA, 25DCMIA, and 34DCMIA. For all other mnDCDMAs and mnDCMIAs, only LE emission is observed in MeCN. The ICT/LE fluorescence quantum yield ratio Φ'(ICT)/Φ(LE) in MeCN at 25 °C is larger for 24DCDMA (1.2) than for 34DCDMA (0.35). The replacement of methyl by isopropyl in the amino substituent leads to a considerable increase of Φ'(ICT)/Φ(LE), 8.8 for 24DCMIA and 1.4 for 34DCMIA, showing that the LE ⇄ ICT equilibrium has shifted further toward ICT. The appearance of an ICT reaction with the 2,4- and 3,4-dicyanoanilines is caused by a relatively small energy gap ΔE(S(1),S(2)) between the two lowest excited singlet states as compared with the other m,n-dicyanoanilines, in accordance with the PICT model. The observation that the ICT reaction is more efficient for 24DCMIA and 34DCMIA than for their mnDCDMA counterparts is mainly caused by the fact that iPrNMe(2) is a better electron donor than N(Me)(3): E(D/D(+)) = 0.84 against 1.05 V vs SCE. That ICT also occurs with 25DCMIA, notwithstanding its large ΔE(S(1),S(2)), is due to the substantial amino twist angle θ = 42.6°, which leads to partial electronic decoupling of the D and A subgroups. The dipole moments µ(e)(ICT) range between 18 D for 34DCMIA and 12 D for 25DCMIA, larger than the corresponding µ(e)(LE) of 16 and 11 D. The difference between µ(e)(ICT) and µ(e)(LE) is smaller than with DMABN (17 and 10 D) because of the noncollinear arrangement of the amino and cyano substituents (different dipole moment directions). The dicyanoanilines that do not undergo ICT, have LE dipole moments between 9 and 16 D. From plots of ln(Φ'(ICT)/Φ(LE)) vs 1000/T, the (rather small) ICT reaction enthalpies ΔH could be measured in MeCN: 5.4 kJ/mol (24DCDMA), 4.7 kJ/mol (24DCMIA), and 3.9 kJ/mol (34DCMIA). With the mnDCDMAs and mnDCMIAs only showing LE emission, the fluorescence decays are single exponential, whereas for those undergoing an LE → ICT reaction the LE and ICT picosecond fluorescence decays are double exponential. In MeCN at 25 °C, the decay times τ(2) have values between 1.8 ps for 24DCMIA and 4.6 ps for 34DCMIA at 25 °C. Longer times are observed at lower temperatures. Arrhenius plots of the forward and backward ICT rate constants k(a) and k(d) of 25DCMIA in tetrahydrofuran, obtained from the LE and ICT fluorescence decays, give the activation energies E(a) = 4.5 kJ/mol and E(d) = 11.9 kJ/mol, i.e., ΔH = -7.4 kJ/mol. From femtosecond transient absorption spectra of 24DCDMA and 34DCDMA at 22 °C, ICT reaction times τ(2) = 1/(k(a) + k(d)) of 1.8 and 3.1 ps are determined. By combining these results with the data for the fluorescence decays and Φ'(ICT)/Φ(LE), the values k(a) = 49 × 10(10) s(-1) (24DCDMA) and k(a) = 23 × 10(10) s(-1) (34DCDMA) are calculated. An LE and ICT excited state absorption is present even at a pump/probe delay time of 100 ps, showing that an LE ⇄ ICT equilibrium is established.

Dual fluorescence and ultrafast intramolecular charge transfer with 6-N,N-dialkylaminopurines. A two-state model.

6-N,N-Dimethyl-9-methyladenine (DMPURM) and 6-N,N-dimethyladenine (DMPURH) show dual fluorescence from a locally excited (LE) and an intramolecular charge transfer (ICT) state in solvents of different polarity over extended temperature ranges. The fluorescence quantum yields are very small, in particular those of LE. For DMPURM in acetonitrile (MeCN) at 25 °C, for example, Φ'(ICT) = 3.2 × 10(-3) and Φ(LE) = 1.6 × 10(-4). The large value of Φ'(ICT)/Φ(LE) indicates that the forward LE → ICT reaction is much faster than the back reaction. The data obtained for the intersystem crossing yield Φ(ISC) show that internal conversion (IC) is the dominant deactivation channel from LE directly to the ground state S(0). For DMPURM in MeCN with Φ(ISC) = 0.22, Φ(IC) = 1 - Φ(ISC) - Φ'(ICT) - Φ(LE) = 0.78, whereas in cyclohexane an even larger Φ(IC) of 0.97 is found. The dipole moment gradually increases upon excitation, from 2.5 D (S(0)), via 6 D (LE) to 9 D (ICT) for DMPURM and from 2.3 D (S(0)), via 7 D (LE) to 8 D (ICT) for DMPURH. From the temperature dependence of Φ'(ICT)/Φ(LE), a reaction enthalpy -ΔH of 11 kJ/mol is obtained for DMPURM in n-hexane (ε(25) = 1.88), increasing to 17 kJ/mol in the more polar solvent di-n-butyl ether (ε(25) = 3.05). With DMPURM in diethyl ether, an activation energy of 8.3 kJ/mol is determined for the LE → ICT reaction (k(a)). The femtosecond excited state absorption spectra at 22 °C undergo an ultrafast decay: 1.0 ps in CHX and 0.63 ps in MeCN for DMPURM, still shorter (0.46 ps) for DMPURH in MeCN. With DMPURM in n-hexane, the LE fluorescence decay time τ(2) increases upon cooling from 2.6 ps at -45 °C to 6.9 ps at -95 °C. The decay involves ICT and IC as the two main pathways: 1/τ(2) ≅ k(a) + k(IC). As a model compound (no ICT) is not available, its lifetime τ(0)(LE) ∼ 1/k(IC) is not known, which prevents a separate determination of k(a). The excited state reactions of DMPURM and DMPURH are treated with a two-state model: S(0) → LE ⇄ ICT. With 6-N-methyl-9-methyladenine (MPURM) and 9-methyladenine (PURM), the fluorescence quantum yield is very low (<5 × 10(-5)) and dominated by impurities, due to enhanced IC from LE to S(0).

Pentacyano-N,N-dimethylaniline in the excited state. Only locally excited state emission, in spite of the large electron affinity of the pentacyanobenzene subgroup.

Pentacyano-N,N-dimethylaniline (PCDMA) does not undergo an intramolecular charge transfer (ICT) reaction, even in the strongly polar solvent acetonitrile (MeCN), in clear contrast to 4-(dimethylamino)benzonitrile (DMABN). Within the twisted ICT (TICT) model, this is unexpected, as the electron affinity of the pentacyanobenzene moiety of PCDMA is much larger than that of the benzonitrile subgroup in DMABN. According to the TICT model, the energy of the ICT state of PCDMA would be 2.05 eV (∼16550 cm(-1)) lower than that of DMABN, on the basis of the reduction potentials E(A(-)/A) of pentacyanobenzene (-0.29 V vs saturated calomel electrode (SCE)) and benzonitrile (-2.36 V vs SCE), more than enough to compensate for the decrease in energy of the locally excited (LE) state of PCDMA (E(S(1)) = 19990 cm(-1)) relative to that of DMABN (E(S(1)) = 29990 cm(-1)). This absence of a LE → ICT reaction shows that the TICT hypothesis does not hold for PCDMA in the singlet excited state, similar to what was found for DMABN, N-phenylpyrrole, and their derivatives. In this connection, the six dicyano-substituted dimethylanilines are also discussed. The energy gap ΔE(S(1),S(2)) between the two lowest singlet excited states is, at 7170 cm(-1) for PCDMA in MeCN, considerably larger than that for DMABN (2700 cm(-1) in n-hexane, smaller in MeCN). The absence of ICT is therefore in accord with the planar ICT (PICT) model, which considers a sufficiently small ΔE(S(1),S(2)) to be an important condition determining whether an ICT reaction will take place. The fluorescence quantum yield of PCDMA is very small: Φ(LE) = 0.0006 in MeCN at 25 °C, predominantly due to LE → S(0) internal conversion (IC), as the intersystem crossing yield Φ(ISC) is practically zero (<0.01). From the LE fluorescence decay time of 27 ps for PCDMA in MeCN at 25 °C, a radiative rate constant k(f)(LE) = 2 × 10(7) s(-1) results, comparable to the k(f)(LE) of DMABN (6.5 × 10(7) s(-1)) and 2,4,6-tricyano-N,N-dimethylaniline (TCDMA) (1.2 × 10(7) s(-1)) in this solvent, but clearly larger than the k'(f)(ICT) = 0.79 × 10(7) s(-1) of DMABN in MeCN. The IC reaction with PCDMA in MeCN at room temperature, with a rate constant k(IC) of 3.6 × 10(10) s(-1), is much faster than with TCDMA (25 × 10(7) s(-1)) and DMABN (1.3 × 10(7) s(-1), in n-hexane). This is connected with the nonzero (37°) amino twist angle of PCDMA, which leads to a decrease of the effective LE-S(0) energy gap. The femtosecond excited state absorption (ESA) spectra of PCDMA in MeCN at 22 °C are similar to the LE ESA spectra of TCDMA and DMABN and are therefore attributed to the LE state, confirming that an ICT reaction does not occur. The decay of the LE ESA spectra of PCDMA is single exponential, with a decay time of 22 ps, in reasonable agreement with the LE fluorescence decay time of 27 ps at 25 °C. The spectra decay to zero, showing that there is no triplet or other intermediate.

Ultrafast intramolecular charge transfer with N-(4-cyanophenyl)carbazole. Evidence for a LE precursor and dual LE + ICT fluorescence.

The photophysics of N-(4-cyanophenyl)carbazole (NP4CN) was investigated by using absorption and fluorescence spectra, picosecond fluorescence decays, and femtosecond transient absorption. In the nonpolar n-hexane as well as in the polar solvent acetonitrile (MeCN), a locally excited (LE) state is detected, as a precursor for the intramolecular charge transfer (ICT) state. A LE → ICT reaction time τ(2) at 22 °C of 0.95 ps in ethyl cyanide (EtCN) and 0.32 ps in MeCN is determined from the decay of the LE excited state absorption (ESA) maximum around 620 nm. In the ESA spectrum of NP4CN in n-hexane at a pump-probe delay time of 100 ps, an important contribution of the LE band remains alongside the ICT band, in contrast to what is observed in EtCN and MeCN. This shows that a LE ⇄ ICT equilibrium is established in this solvent and the ICT reaction time of 0.5 ps is equal to the reciprocal of the sum of the forward and backward ICT rate constants 1/(k(a) + k(d)). In the photostationary S(0) → S(n) absorption spectrum of NP4CN in n-hexane and MeCN, an additional CT absorption band appears, absent in the sum of the spectra of its electron donor (D) and acceptor (A) subgroups carbazole and benzonitrile. This CT band is located at an energy of ∼4000 cm(-1) lower than for N-phenylcarbazole (NPC), due to the larger electron affinity of the benzonitrile moiety of NP4CN than the phenyl subunit of NPC. The fluorescence spectrum of NP4CN in n-hexane at 25 °C mainly consists of a structured LE emission, with a small ICT admixture, indicating that a LE → ICT reaction just starts to occur under these conditions. In di-n-pentyl ether (DPeE) and di-n-butyl ether (DBE), a LE emission is found upon cooling at the high-energy edge of the ICT fluorescence band, caused by the onset of dielectric solvent relaxation. This is not the case in more polar solvents, such as diethyl ether (DEE) and MeCN, in which a structureless ICT emission band fully overlaps the strongly quenched LE fluorescence. For the series of D/A molecules NPC, N-(4-fluorophenyl)carbazole (NP4F), N-[4-(trifluoromethyl)phenyl]carbazole (NP4CF), and NP4CN, with increasing electron affinity of their phenyl subgroup, an ICT emission in n-hexane 25 °C only is present for NP4CN, whereas in MeCN an ICT fluorescence is observed with NP4CF and NP4CN. The ICT fluorescence appears when for the energies E(ICT) of the ICT state and E(S(1)) of the lowest excited singlet state the condition E(ICT) ≤ E(S(1)) holds. E(ICT) is calculated from the difference E(D/D(+)) - E(A(-)/A) of the redox potentials of the D and A subgroups of the N-phenylcarbazoles. From solvatochromic measurements with NP4CN an ICT dipole moment µ(e)(ICT) = 19 D is obtained, somewhat larger than the literature values of 10-16 D, because of a different Onsager radius ρ. The carbazole/phenyl twist angle θ = 45° of NP4CN in the S(0) ground state, determined from X-ray crystal analysis, has become smaller for its ICT state, in analogy with similar conclusions for related N-phenylcarbazoles and other D/A molecules in the literature.

Intramolecular charge transfer with fluorazene and N-phenylpyrrole.

The reaction from the initially prepared locally excited (LE) precursor to the intramolecular charge transfer (ICT) state of the planarized fluorazene (FPP) is investigated and compared with its flexible counterpart N-phenylpyrrole (PP). The fluorescence spectra of FPP and PP at 25 degrees C in solvents of different polarity reveal that the onset of a LE --> ICT reaction occurs at lower polarity (tetrahydrofuran, epsilon = 7.39) for FPP than for PP (1,2-dichloroethane, epsilon = 10.4). In accordance with this observation, the ICT reaction enthalpy -DeltaH is larger for FPP than for PP, 16.7 versus 6.7 kJ/mol in ethyl cyanide (EtCN). The larger ICT efficiency of FPP is related to the smaller energy gap between the two lowest excited singlet states DeltaE(S(1),S(2)): 3680 cm(-1) for FPP and 4070 cm(-1) for PP in n-hexane, as would be expected in the context of the PICT model. From picosecond fluorescence decays in EtCN at -45 degrees C it is found that the LE --> ICT reaction rate constant k(a) of FPP is with 9.8 x 10(10) s(-1) considerably larger than that of PP with 3.9 x 10(10) s(-1). From femtosecond transient absorption spectra in acetonitrile (MeCN) at 22 degrees C, an ICT reaction time of 1.6 ps is obtained for FPP, shorter than the 4.0 ps determined for PP. The results show that a perpendicular twist of the pyrrole and phenyl subgroups is not required for an efficient ICT reaction with PP, the planarization of FPP even making this reaction faster. The similarity of the ESA spectra of FPP with those of PP in MeCN, with ICT absorption maxima at 365 nm (FPP) and 370 nm (PP), leads to the conclusion that both ICT states have a planar structure.

Intramolecular charge transfer of 4-(dimethylamino)benzonitrile probed by time-resolved fluorescence and transient absorption: No evidence for two ICT states and a pisigma( *) reaction intermediate.

For the double exponential fluorescence decays of the locally excited (LE) and intramolecular charge transfer (ICT) states of 4-(dimethylamino)benzonitrile (DMABN) in acetonitrile (MeCN) the same times tau(1) and tau(2) are observed. This means that the reversible LE<==>ICT reaction, starting from the initially excited LE state, can be adequately described by a two state mechanism. The most important factor responsible for the sometimes experimentally observed differences in the nanosecond decay time, with tau(1)(LE)

Intramolecular charge transfer with 4-fluorofluorazene and the flexible 4-fluoro-N-phenylpyrrole.

With 4-fluorofluorazene (FPP4F) and its flexible counterpart 4-fluoro-N-phenylpyrrole (PP4F) an intramolecular charge transfer (ICT) reaction occurs in the singlet excited state in sufficiently polar solvents. The ICT reaction begins to appear in tetrahydrofuran (epsilon = 7.4) for FPP4F and in the more polar 1,2-dichloroethane (epsilon = 10.4) with PP4F, showing its presence by dual fluorescence from a locally excited (LE) and an ICT state. Only LE fluorescence is observed in less polar solvents such as n-hexane. The ICT reaction is more pronounced with FPP4F than for PP4F, due to the smaller energy gap DeltaE(S1,S2) of the former molecule, in accordance with the PICT model. The occurrence of an ICT reaction is confirmed by the ICT dipole moments mu(e)(ICT) of 12 D (FPP4F) and 10 D (PP4F), clearly larger than mu(e)(LE) of approximately 4 D for FPP4F and PP4F. Isoemissive points are found in the fluorescence spectra of FPP4F and PP4F in acetonitrile (MeCN), ethyl cyanide (EtCN), and n-propyl cyanide (PrCN) as a function of temperature, confirming the two-state (LE and ICT) reaction mechanism. From plots of the logarithm of the ICT/LE fluorescence quantum yield ratio versus the reciprocal absolute temperature in these solvents, the ICT reaction enthalpies DeltaH are determined, with larger -DeltaH values for FPP4F than for PP4F: 19.2 as compared with 14.9 kJ/mol in MeCN, as an example. The picosecond fluorescence decay of PP4F at -45 degrees C becomes slower with decreasing solvent polarity, 5.1 ps (MeCN), 14 ps (EtCN), and 35 ps (PrCN), from which the LE --> ICT reaction rate constant is calculated, decreasing from 19 x 10(10) to 2.1 x 10(10) s(-1) between MeCN and PrCN. The femtosecond LE excited-state absorption spectra of FPP4F and PP4F do not undergo any time development in n-hexane (no ICT reaction), but show a fast ICT reaction in MeCN at 22 degrees C, with decay times of 1.1 ps (FPP4F) and 3.3 ps (PP4F). It is concluded that FPP4F and PP4F have a planar ICT state (PICT model), indicating that a perpendicular twist of the donor and acceptor subgroups in a donor/acceptor molecule is not a requirement for fast and efficient ICT. The molecular structures of FPP4F and PP4F obtained from X-ray crystal analysis reveal that the pyrrole group of PP4F is twisted over an angle theta = 25 degrees relative to the fluorophenyl moiety in the ground state, whereas as expected FPP4F is practically planar (theta = 2 degrees). The pyrrole-phenyl bond length of FPP4F (140.7 pm) is shorter than that for PP4F (141.8 pm).

Counterintuitive absence of an excited-state intramolecular charge transfer reaction with 2,4,6-tricyanoanilines. Experimental and computational results.

The fluorescence spectra of 2,4,6-tricyano-N,N-dimethylaniline (TCDMA), 2,4,6-tricyano-N-methylaniline (TCMA), and 2,4,6-tricyanoaniline (TCA) consist of a single emission band, even in the polar solvent acetonitrile (MeCN). This indicates that an intramolecular charge transfer (ICT) reaction from the initially prepared locally excited (LE) state does not take place with these molecules, in contrast to 4-(dimethylamino)benzonitrile (DMABN), although the electron accepting capability of the tricyanobenzene moiety in TCDMA, TCMA, and TCA is substantially larger than that of the benzonitrile group in DMABN. In support of this conclusion, the picosecond fluorescence decays of the tricyanoanilines are single-exponential. Only with TCDMA in MeCN at the highest time resolution, double-exponential decays are observed. On the basis of a similar temporal evolution of around 2 ps in the femtosecond excited-state absorption (ESA) spectra of TCDMA in this solvent, the time development is attributed to the presence of two rapidly interconverting S(1) conformers. The same conclusion is reached from CASPT2/CASSCF computations on TCDMA, in which two S(1) minima are identified. The ESA spectra of TCDMA, TCMA, and TCA resemble that of the LE state of DMABN, but are different from its ICT ESA spectrum, likewise showing that an ICT reaction does not occur with the tricyanoanilines. From the luminescence spectrum of TCDMA in n-propyl cyanide at -160 degrees C, it follows that intersystem crossing and not internal conversion is the main S(1) deactivation channel. The radiative rate constant of TCDMA in MeCN is smaller than that of TCMA and TCA, which indicates that the S(1) state of TCDMA has a larger ICT contribution than in the case of TCMA and TCA, in accordance with the results of the calculations, which show that the S(1) state displays ICT valence bond character. Extrapolated gas-phase data for TCDMA and TCA are compared with the results of the computations, revealing a good agreement. The calculations on TCDMA and TCA also lead to the conclusion that the lowest excited singlet state S(1) determines its photophysical behavior, without the occurrence of an LE --> ICT reaction, in the sense that the initially excited LE state has already a strong ICT character and there is no equilibrium between two electronic states with strongly different electronic structures (i.e., LE and ICT with very different dipole moments) leading to dual (LE + ICT) fluorescence.

Intramolecular charge transfer with the planarized 4-cyanofluorazene and its flexible counterpart 4-cyano-N-phenylpyrrole. Picosecond fluorescence decays and femtosecond excited-state absorption.

The fluorescence spectrum of the rigidified 4-cyanofluorazene (FPP4C) in n-hexane consists of a dual emission from a locally excited (LE) and an intramolecular charge-transfer (ICT) state, with an ICT/LE fluorescence quantum yield ratio of Phi'(ICT)/Phi(LE) = 3.3 at 25 degrees C. With the flexible 4-cyano- N-phenylpyrrole (PP4C) in n-hexane, such an ICT reaction also takes place, with Phi'(ICT)/Phi(LE) = 1.5, indicating that for this reaction, a perpendicular twist of the pyrrole and benzonitrile moieties is not required. The ICT emission band of FPP4C and PP4C in n-hexane has vibrational structure, but a structureless band is observed in all other solvents more polar than the alkanes. The enthalpy difference Delta H of the LE --> ICT reaction in n-hexane, -11 kJ/mol for FPP4C and -7 kJ/mol for PP4C, is determined by analyzing the temperature dependence of Phi'(ICT)/Phi(LE). Using these data, the energy E(FC,ICT) of the Franck-Condon ground state populated by the ICT emission is calculated, 41 (FPP4C) and 40 kJ/mol (PP4C). These large values for E(FC,ICT) lead to the conclusion that with FPP4C and PP4C, direct ICT excitation, bypassing LE, does not take place. FPP4C has an ICT dipole moment of 15 D, similar to that of PP4C (16 D). Picosecond fluorescence decays allow the determination of the ICT lifetime, from which the radiative rate constant k'(f)(ICT) is derived, with comparable values for FPP4C and PP4C. This shows that an argument for a twisted ICT state of PP4C cannot come from k'(f)(ICT). After correction for the solvent refractive index and the energy of the emission maximum nu(max)(ICT), it appears that k'(f)(ICT) is solvent-polarity-independent. Femtosecond transient absorption with FPP4C and PP4C in n-hexane reveals that the ICT state is already nearly fully present at 100 fs after excitation, in rapid equilibrium with LE. In MeCN, the ICT state of FPP4C and PP4C is likewise largely developed at this delay time, and the reaction is limited by dielectric solvent relaxation, which shows that the ICT reaction is ultrafast, at the experimental time limit of 50 fs. PP4C and FPP4C have a similar planar ICT structure, without an appreciable twist of the pyrrole and benzonitrile subgroups. Their crystal structure is compared with calculations for the S0 ground state.

Solvation oscillations and excited-state dynamics of 2-amino- and 2-hydroxy-7-nitrofluorene and its 2'-deoxyriboside.

Push-pull substituted fluorenes are considered for use as dynamic solvation probes in polynucleotides. Their fluorescence band is predicted (by simulations) to show weak spectral oscillations on the subpicosecond time scale depending on the nucleotide sequence. The oscillations reflect the local far-infrared spectrum of the environment around the probe molecule. A connection is provided by the continuum theory of polar solvation which, however, neglects molecular aspects. We examine the latter using acetonitrile solution as a test case. A collective librational solvent mode at 100 cm(-1) is observed with 2-amino-7-nitrofluorene, 2-dimethylamino-7-nitrofluorene, 2-hydroxy-7-nitrofluorene, and its 2'-deoxyriboside. Different strengths of the oscillation indicate that rotational friction of nearby acetonitrile molecules depends on the solute structure or that H bonding is involved in launching the librational coherence. Polar solvation in methanol is used for comparison. With hydroxynitrofluorenes, the observation window is limited by intersystem crossing for which rates are reported. A prominent excited-state absorption band of nitrofluorenes at 430 nm can be used to monitor polar solvation. Structural and electronic relaxation pathways are discussed with the help of quantum chemical calculations.

Ultrafast intramolecular charge transfer with strongly twisted aminobenzonitriles: 4-(di-tert-butylamino)benzonitrile and 3-(di-tert-butylamino)benzonitrile.

The newly synthesized aminobenzonitriles with two bulky amino substituents 4-(di-tert-butylamino)benzonitrile (DTABN) and 3-(di-tert-butylamino)benzonitrile (mDTABN) have strongly twisted amino groups in the ground state. From X-ray crystal analysis it is found that the amino twist angle theta of mDTABN equals 86.5 degrees , whereas a twist angle of around 75 degrees is deduced for DTABN from the extinction coefficient of its lowest-energy absorption band in n-hexane. Because of the electronic decoupling between the amino and benzonitrile groups caused by these large twist angles, the absorption of DTABN and mDTABN is relatively weak below 40000 cm-1, with extinction coefficients around 25 times smaller than those of the planar 4-(dimethylamino)benzonitrile (DMABN). DTABN as well as mDTABN undergo efficient intramolecular charge transfer (ICT) in the singlet excited state, in nonpolar (n-hexane) as well as in polar (acetonitrile) solvents. Their fluorescence spectra consist of an ICT emission band, without evidence for locally excited (LE) fluorescence. The occurrence of efficient ICT with mDTABN is different from the findings with all other N,N-dialkylaminobenzonitriles in the literature, for which ICT only appears with the para-derivative. From solvatochromic measurements, an ICT dipole moment of 17 D is determined for DTABN as well as for mDTABN, similar to that of DMABN. The picosecond fluorescence decays of DTABN (time resolution 3 ps) are effectively single exponential. Their decay time is equal to the ICT lifetime tau'0(ICT), which increases with solvent polarity from 0.86 ns in n-hexane to 3.48 ns in MeCN at 25 degrees C. The femtosecond excited-state absorption (ESA) spectra of DTABN in n-hexane and MeCN at 22 degrees C show a decay of the LE and a corresponding rise of the ICT absorption. The ICT reaction time is 70 fs in n-hexane and 60 fs in MeCN. DTABN and mDTABN may have a strongly twisted ICT state, similar to that of 6-cyanobenzoquinuclidine but different from that of DMABN.

Dynamics of ultrafast intramolecular charge transfer with 1-tert-butyl-6-cyano-1,2,3,4-tetrahydroquinoline (NTC6) in n-hexane and acetonitrile.

The intramolecular charge transfer (ICT) reaction of 1-tert-butyl-6-cyano-1,2,3,4-tetrahydroquinoline (NTC6) in n-hexane and acetonitrile (MeCN) is investigated by picosecond fluorescence experiments as a function of temperature and by femtosecond transient absorption measurements at room temperature. NTC6 in n-hexane is dual fluorescent from a locally excited (LE) and an ICT state, with a quantum yield ratio Phi'(ICT)/Phi(LE) of 0.35 at +25 degrees C and 0.67 at -95 degrees C, whereas in MeCN mainly an ICT emission is observed. From the temperature dependence of Phi'(ICT)/Phi(LE) for NTC6 in n-hexane, an LE/ICT enthalpy difference DeltaH of -2.4 kJ/mol is determined. For comparison, 1-isopropyl-6-cyano-1,2,3,4-tetrahydroquinoline (NIC6) is also investigated. This molecule does not undergo an ICT reaction, because of its larger energy gap DeltaE(S1,S2). From the molar absorption coefficient epsilonmax of NTC6 as compared with other aminobenzonitriles, a ground-state amino twist angle theta of approximately 22 degrees is deduced. The increase of epsilonmax between n-hexane and MeCN indicates that theta decreases when the solvent polarity becomes larger. Whereas single-exponential LE fluorescence decays are obtained for NIC6 in n-hexane and MeCN, the LE and ICT decays of NTC6 in these solvents are double exponential. For NTC6 in n-hexane at -95 degrees C, with a shortest decay time of 20 ps, the forward (ka=2.5x10(10) s(-1)) and backward (kd=2.7x10(10) s(-1)) rate constants for the LE<-->ICT reaction are determined from the time-resolved LE and ICT fluorescence spectra. For NTC6 in n-hexane and MeCN, the excited-state absorption (ESA) spectrum at 200 fs after excitation is similar to the LE(ESA) spectra of NIC6 and 4-(dimethylamino)benzonitrile (DMABN), showing that LE is the initially excited state for NTC6. These results indicate that the LE states of NTC6, NIC6, and DMABN have a comparable molecular structure. The ICT(ESA) spectrum of NTC6 in n-hexane and MeCN resembles that of DMABN in MeCN, likewise indicating a similar ICT structure for NTC6 and DMABN. From the decay of the LE absorption and the corresponding growing-in for the ICT state of NTC6, it is concluded that the ICT state originates from the LE precursor and is not formed by direct excitation from S0, nor via an S2/ICT conical intersection. The same conclusion was made from the time-resolved (picosecond) fluorescence spectra, where there is no ICT emission at time zero. The decay of the LE(ESA) band of NTC6 in n-hexane occurs with a shortest time tau2 of 2.2 ps. The ICT reaction is much faster (tau2 = 0.82 ps) in the strongly polar MeCN. The absence of excitation wavelength dependence (290 and 266 nm) for the ESA spectra in MeCN also shows that LE is the ICT precursor. With NIC6 in n-hexane and MeCN, a decay or growing-in of the femtosecond ESA spectra is not observed, in line with the absence of an ICT reaction involving an S2/ICT conical intersection.

2-Amino-7-nitro-fluorenes in neat and mixed solvents-optical band shapes and solvatochromism.

Femtosecond transient absorption spectroscopy of amino-nitro-fluorenes in the UV-visible range shows that the dynamic Stokes shift of the emission band is sensitive to infrared-active modes of the solvent. Bandshapes for stationary absorption and emission are needed to quantify the observed spectral evolution. They are reported for 2-amino-7-nitro-fluorene (ANF), 2-dimethylamino-7-nitro-fluorene (dM-ANF), and 2-di(n-butyl)amino-7-nitro-9-di(n-propyl)-fluorene (dBdP-ANF) in a variety of solvents. Bands broaden systematically with increasing solvent polarity. This effect is taken into account in an improved location of band positions. The resulting solvatochromic plots differ significantly from those that use peak positions of absorption spectra and fluorescence quantum distributions. Absorption spectra were also measured in aqueous solvent mixtures, and shifts are described by binding curves for hydrogen bonding and stepwise solvent exchange.

Dynamics of ultrafast intramolecular charge transfer with 4-(dimethylamino)benzonitrile in acetonitrile.

The kinetics of the intramolecular charge-transfer (ICT) reaction of 4-(dimethylamino)benzonitrile (DMABN) in the polar solvent acetonitrile (MeCN) is investigated by fluorescence quantum yield and picosecond time-correlated single photon counting (SPC) experiments over the temperature range from -45 to +75 degrees C, together with femtosecond Sn <-- S1 transient absorption measurements at room temperature. For DMABN in MeCN, the fluorescence from the locally excited (LE) state is strongly quenched, with an unquenched to quenched fluorescence quantum yield ratio of 290 at 25 degrees C. Under these conditions, even very small amounts of the photoproduct 4-(methylamino)benzonitrile (MABN) severely interfere, as the LE fluorescence of MABN is in the same spectral range as that of DMABN. The influence of photoproduct formation could be overcome by a simultaneous analysis of the picosecond and photostationary measurements, resulting in data for the activation barriers Ea (5 kJ/mol) and Ed (32 kJ/mol) of the forward and backward ICT reaction as well as the ICT reaction enthalpy and entropy: DeltaH (-27 kJ/mol) and DeltaS [-38 J/(mol K)]. The reaction hence takes place over a barrier, with double-exponential fluorescence decays, as to be expected in a two-state reaction. From femtosecond transient absorption down to 200 fs, the LE and ICT excited state absorption (ESA) spectra of DMABN in n-hexane (LE) and in MeCN (LE and ICT) and also of 4-aminobenzonitrile in MeCN (LE) are obtained. For DMABN in MeCN, the quenching of the LE and the rise of the ICT ESA bands occurs with a single characteristic time of 4.1 ps, the same as the ICT reaction time found from the picosecond SPC experiments at 25 degrees C. The sharp ICT peak at 320 nm does not change its spectral position after a pump-probe delay time of 200 fs, which suggests that large amplitude motions do not take place after this time. The increase with time in signal intensity observed for the LE spectrum of DMABN in n-hexane between 730 and 770 nm, is attributed to solvent cooling of the excess excitation energy and not to an inverse ICT --> LE reaction, as reported in the literature.